Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
6.7 years ago melkile26 • 0
1
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2
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1.5k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.7 years ago atakanekiz ▴ 30
5
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7
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3.2k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 20
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2
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4.2k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.1 years ago by • 0 • written 7.1 years ago by • 0
2
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4
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2.3k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.6 years ago by 52k • written 7.6 years ago by ▴ 30
1
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0
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1.7k
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DESeq2 - GAGE workflow
gage package deseq2
7.7 years ago sup230 ▴ 30
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2
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1.9k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.4 years ago by ★ 1.6k • written 8.5 years ago by • 0
1
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2
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1.7k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.6 years ago joanito.liberti • 0
0
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1
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.7 years ago rl1385 • 0
0
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0
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1.1k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.8 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k
If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
Votes
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
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Scholar to Aaron Lun ★ 28k
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