Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
6.3 years ago melkile26 • 0
1
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2
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1.3k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.3 years ago atakanekiz ▴ 30
5
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7
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3.0k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 20
0
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2
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3.9k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.7 years ago by • 0 • written 6.7 years ago by • 0
2
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4
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2.1k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.2 years ago by 51k • written 7.2 years ago by ▴ 30
1
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0
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1.6k
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DESeq2 - GAGE workflow
gage package deseq2
7.3 years ago sup230 ▴ 30
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2
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1.8k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.0 years ago by ★ 1.6k • written 8.1 years ago by • 0
1
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2
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1.6k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.2 years ago joanito.liberti • 0
0
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1
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.3 years ago rl1385 • 0
0
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0
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1.0k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.3 years ago smt8n • 0
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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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